用于快速有效地清洗和浓缩总 RNA(包括 microRNA),不含苯酚。
RNA 清理和浓缩试剂盒
用于快速有效地清洗和浓缩总 RNA(包括 microRNA),不含苯酚。
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概述
这些试剂盒用于清理和浓缩 TRIzol® 和 TRI Reagent®、酶反应、体外转录、标记反应等产生的 RNA(包括 miRNA)。这些试剂盒功能强大,可用于所有清理和浓缩工作,最多可处理 35 µg 的 RNA 溶液。纯化的 RNA 具有最高的纯度和完整性,可用于多种下游应用。这些试剂盒可纯化各种大小的 RNA,从大 mRNA 和核糖体 RNA 到 miRNA、siRNA 和 lncRNA。
RNA 清理和浓缩试剂盒(旋转柱)
Norgen 的 RNA 清理和浓缩试剂盒提供了一种快速方法,用于纯化、清理和浓缩使用不同方法(包括基于苯酚/胍的方案)以及从各种上游酶反应(如 DNase 处理和标记)中分离出来的多达 35 μg 的 RNA。该试剂盒可在 20 µL 内洗脱 RNA。20 分钟内完成 10 次纯化。
RNA 清理和浓缩 96 孔试剂盒(高通量)
Norgen 的 RNA 清理和浓缩 96 孔试剂盒提供了一种快速方法,用于纯化、清理和浓缩使用不同方法(包括基于苯酚/胍的方案)以及各种上游酶反应(如 DNase 处理和标记)分离的多达 50 μg 的 RNA。该试剂盒可在 75 µL 内洗脱 RNA。30 分钟内完成 10 次纯化。
RNA 净化和浓缩 Micro-Elute 试剂盒(Micro-Elute)
Norgen 的 RNA 净化和浓缩微量洗脱试剂盒提供了一种快速方法,用于纯化、净化和浓缩使用不同方法(包括基于苯酚/胍的方案)以及从各种上游酶反应(如 DNase 处理、标记和体外转录)中分离出来的多达 45 μg 的 RNA。该试剂盒用于以 8 µL 的较小体积洗脱 RNA,适用于所有类型的下游应用,以获得最高浓度的 RNA 样本。20 分钟内完成 10 次纯化。
细节
Supporting Data
Figure 1. Effective Clean-Up to Produce High Quality Total RNA with Complete Size Diversity.
Norgen's RNA Clean-Up and Concentration Kit effectively cleans up RNA isolated from phenol-based extractions without the loss of RNA diversity by retaining all RNA species including small RNAs. Total RNA was isolated from 5 x 108 E. coli using a competitor's phenol-based RNA extraction reagent. The resulting RNA was then purified using Norgen’s RNA Clean-Up and Concentration Kit. As controls, total RNA was extracted using both Norgen's Total RNA Purification Kit (#17200, no phenol required) and the phenol-based RNA extraction reagent only without any clean-up. Resolution of 7 µL of the 50 µL purified RNA on a 1X MOPS, 1.5% formaldehyde-agarose gel showed the RNA extracted with phenol was successfully cleaned-up by Norgen's RNA Clean-Up and Concentration Kit without the loss of small RNA species.
Figure 2. Effective Clean-Up to Produce High Quality Total RNA Compatible to Bioanalyzer Analysis.
Total RNA was isolated from 0.75 million HeLa cells using a competitor's phenol-based RNA extraction reagent. The resulting RNA was then purified using Norgen's RNA Clean-Up and Concentration Kit. As controls, total RNA was extracted using both Norgen's Total RNA Purification Kit (#17200, no phenol required) or the phenol-based RNA extraction reagent only without clean-up. Resolution of 1 µL of the 50 µL purified RNA on an Agilent RNA Nano 6000 Chip showed that without clean-up, the RNA sample isolated using the phenol-based RNA extraction reagent only resolved poorly on a bioanalyzer. In contrast, RNA extracted with the phenol-based RNA extraction reagent followed by clean-up by Norgen's RNA Clean-Up and Concentration Kit resolved properly on the bioanalyzer showing excellent quality.
Figure 3. Effective Concentration and Detection of Low Amounts of RNA Input.
Norgen's RNA Clean-Up and Concentration Kit can effectively concentration RNA inputs in the picogram range. Increasing amounts of HeLa RNA in 50 µL input volumes were concentrated to 20 µL using Norgen's RNA Clean-Up and Concentration Kit. A 10 µL aliquot of the purified RNA was then used as the template in a qRT-PCR reaction to detect the S14 gene. The amounts indicated on the graph correspond to the amount of RNA that was used as the input for the qRT-PCR reaction, demonstrating the consistent performance of the kit even in the picogram range.
Figure 4. Effective Clean-Up to Produce High Quality RNA Transcripts.
Norgen's RNA Clean-Up and Concentration Kit effectively cleans up RNA transcripts with high recovery. Three RNA transcripts (1-3) of different sizes (266n, 161n and 419n, respectively) were produced using Norgen's RNA Clean-Up and Concentration Kit. The resulting RNA transcripts were then purified using Norgen's RNA Clean-Up and Concentration Kit. Resolution of 7.5 µL of the 50 µL cleaned RNA (C) as well as an equal volume of the uncleaned input (I) on a 1X MOPS, 1.5% formaldehyde-agarose gel showed the RNA transcript was successfully cleaned-up by Norgen's RNA Clean-Up and Concentration Kit.
Figure 5. Effective Clean-Up to Produce High Quality RNA Transcripts Compatible to Bioanalyzer Analysis.
Norgen's RNA Clean-Up and Concentration Kit effectively cleans up RNA transcripts with high recovery. Three RNA transcripts (1-3) of different sizes (266n, 161n and 419n, respectively) were produced using Norgen's RNA Clean-Up and Concentration Kit. Resolution of 1 µL of the 50 µL cleaned RNA transcripts on an Agilent RNA Nano 6000 Chip showed that RNA transcripts cleaned by Norgen's RNA Clean-Up and Concentration Kit resolved properly on the bioanalyzer showing excellent quality.
Figure 6. Excellent Quality of Concentrated RNA.
Total RNA isolated from HeLa cells (2 µg) was concentrated to 8 µL using the RNA Clean-Up and Concentration Micro-Elute Kit. The excellent quality is indicated by the electropherogram generated using the Agilent 2100 Bioanalyzer (RIN > 9). The concentrated RNA is a true 'total RNA' as can be observed by the presence of small RNA species.
Figure 7. High Recovery of Concentrated RNA.
Total RNA isolated from HeLa cells (17.5 µL) was concentrated to 8 µL using the RNA Clean-Up and Concentration Micro-Elute Kit resulting in a 2-2.2 fold increase in RNA concentration, as was measured by Agilent 2100 Bioanalyzer quantification.
Figure 8. Concentration of Total RNA.
The indicated amounts of HeLa RNA were concentrated using the RNA Clean-Up and Concentration Micro-Elute Kit. For each input amount, a 17.5 µL volume was processed and the RNA eluted in 8 µL, resulting in a 2.2 fold concentration. Three microliters of each eluate were used in 10 µL RT reactions with the oligo-dT primer, followed by real-time PCR using 3 µL of the resulting cDNA and primers specific for the human RPS15 gene. On average, amplifications of the concentrated RNA reached threshold 1 Ct value before the input RNA samples, which was expected based on the concentration factor. The lowest input amount used (240 pg) was only amplified when concentrated (most right sample in figure).
Figure 9. Concentration of miRNA.
The indicated amounts of HeLa RNA were concentrated using the RNA Clean-Up and Concentration Micro-Elute Kit. Three microliters of each 8 µL eluate were used in 10 µL RT reactions with the miR-21-SLR primer, followed by real-time PCR using 3 µL of the resulting cDNA and the forward primer specific for miR-21.
Figure 10. Concentration of RNA prior to Next Generation Sequencing (NGS) applications.
Total RNA was purified from 200 µL of plasma collected on EDTA blood tubes using Norgen's Total RNA Purification Kit (Cat. 17200) and eluted in 50 µL of elution solution. The same RNA was also concentrated two-fold using the Micro-Elute RNA Column by eluting in 25 µL of elution solution. Five microliters of both the RNA without additional concentration and the 2X concentrated RNA were used as inputs to generate RNA libraries (using the NEBNext® Small RNA Library Prep Set for Illumina® and following manufacturer’s instructions) for small RNA NGS on the MiSeq (Illumina) platform. A) The prepared small RNA libraries were visualized on a 6% TBE polyacrylamide gel, where the library prepared with 2X concentrated RNA contained more ligated/indexed miRNA cDNA (147-160 bp) products than the library prepared using the RNA without concentration. B) The cDNA was extracted from excised gel bands and interrogated using the Agilent 2100 Bioanalyzer (High Sensitivity DNA Assay). As would be expected based on input, the small RNA library prepared with the 2X concentrated RNA sample was approximately two times more concentrated than the library prepared with RNA without prior concentration (39.8 vs 21.2 nM, respectively).
支持数据
图 1.有效清理,生成具有完全尺寸多样性的优质总 RNA。Norgen 的 RNA 清理和浓缩试剂盒能有效清理从苯酚提取物中分离出来的 RNA,保留包括小 RNA 在内的所有 RNA 种类,不会损失 RNA 的多样性。使用竞争对手的苯酚基 RNA 提取试剂从 5 x 108 个大肠杆菌中分离出总 RNA。然后使用 Norgens RNA 清理和浓缩试剂盒对得到的 RNA 进行纯化。作为对照,使用 Norgen 的总 RNA 纯化试剂盒(17200,无需酚)和酚基 RNA 提取试剂提取总 RNA,无需任何清理。在 1X MOPS、1.5% 甲醛-琼脂糖凝胶上对 50 µL 纯化 RNA 中的 7 µL 进行分辨,结果表明,用苯酚提取的 RNA 已被 Norgen 的 RNA 清理和浓缩试剂盒成功清理,没有损失小 RNA 物种。
图 2.有效清理,生成与生物分析仪分析兼容的优质总 RNA。使用竞争对手的苯酚基 RNA 提取试剂从 0.75 万个 HeLa 细胞中分离出总 RNA。然后使用 Norgen 的 RNA 清理和浓缩试剂盒纯化得到的 RNA。作为对照,使用 Norgen 的总 RNA 纯化试剂盒(17200,无需酚)或仅使用酚基 RNA 提取试剂提取总 RNA,无需净化。在 Agilent RNA Nano 6000 芯片上对 50 µL 纯化 RNA 中的 1 µL 进行分辨后发现,使用苯酚基 RNA 提取试剂分离的 RNA 样本在生物分析仪上的分辨能力很差。相比之下,用酚基 RNA 提取试剂提取的 RNA 经 Norgen 的 RNA 清理和浓缩试剂盒清理后,能在生物分析仪上正常解析,显示出极佳的质量。
图 3.有效浓缩和检测低量 RNA 输入。Norgen 的 RNA 清理和浓缩试剂盒可有效浓缩一皮克范围内的 RNA 输入。使用 Norgen 的 RNA 清理和浓缩试剂盒将输入体积为 50 µL 的 HeLa RNA 浓缩至 20 µL。然后,在检测 S14 基因的 qRT-聚合酶链式反应中,用 10 µL 等分纯化的 RNA 作为模板。图中所示的量与 qRT-聚合酶链式反应中输入的 RNA 量一致,表明即使在皮克范围内,试剂盒的性能也是一致的。
图 4.Norgen 的 RNA 清理和浓缩试剂盒可有效清理 RNA 转录本,并实现高回收率。使用 Norgen 的 RNA 清理和浓缩试剂盒生成了三种不同大小(分别为 266n、161n 和 419n)的 RNA 转录本(1-3)。然后使用 Norgen 的 RNA 清理和浓缩试剂盒纯化得到的 RNA 转录本。在 1X MOPS、1.5% 甲醛-琼脂糖凝胶上分辨 7.5 µL 的 50 µL 清洁 RNA (C) 和等体积的未清洁输入 RNA (I),结果显示 Norgen 的 RNA 清洁和浓缩试剂盒成功清洁了 RNA 转录本。
图 5.有效清理,生成与生物分析仪分析兼容的优质 RNA 转录本。Norgen 的 RNA 清理和浓缩试剂盒可有效清理 RNA 转录本,且回收率高。使用 Norgen 的 RNA 清理和浓缩试剂盒生成了三种不同大小(分别为 266n、161n 和 419n)的 RNA 转录本(1-3)。在 Agilent RNA Nano 6000 芯片上分辨 1 µL 的 50 µL 清洁 RNA 转录本显示,经 Norgen 的 RNA 清洁和浓缩试剂盒清洁的 RNA 转录本在生物分析仪上分辨正常,显示出极佳的质量。
图 6.浓缩核糖核酸质量上乘。使用 RNA 清理和浓缩 Micro-Elute 试剂盒将从 HeLa 细胞中分离出的总 RNA(2 µg)浓缩至 8 µL。使用 Agilent 2100 生物分析仪生成的电泳图(RIN > 9)显示了其卓越的质量。浓缩后的 RNA 是真正的“总 RNA”,这一点可以通过小 RNA 的存在观察到。
图 7.浓缩 RNA 的高回收率。从 HeLa 细胞中分离出的总 RNA(17.5 µL)使用 RNA 清理和浓缩 Micro-Elute 试剂盒浓缩至 8 µL,结果 RNA 浓度增加了 2-2.2 倍,这是用 Agilent 2100 生物分析仪定量测量的结果。
图 8.总 RNA 的浓度。使用 RNA 清理和浓缩 Micro-Elute 试剂盒浓缩指定量的 HeLa RNA。对于每个输入量,处理 17.5 µL 的体积,用 8 µL 洗脱 RNA,从而得到 2.2 倍的浓度。每种洗脱液取 3µL,与寡聚-dT 引物一起用于 10 µL RT 反应,然后使用 3 µL 产生的 cDNA 和人类 RPS15 基因的特异性引物进行实时聚合酶链式反应。平均而言,浓缩 RNA 的扩增比输入 RNA 样本早达到 1 Ct 的阈值,这是根据浓缩因子预计的。使用的最低输入量(240 pg)只有在浓缩时才会扩增(图中最右侧的样本)。
图 9.miRNA 的浓度。使用 RNA 清理和浓缩 Micro-Elute 试剂盒浓缩指定量的 HeLa RNA。在使用 miR-21-SLR 引物的 10 µL RT 反应中,每 8 µL 洗脱液使用 3 µL,然后使用 3 µL 产生的 cDNA 和 miR-21 特异性前向引物进行实时聚合酶链式反应。
图 10.下一代测序 (NGS) 应用前的 RNA 浓缩。使用 Norgen 总 RNA 纯化试剂盒(类别号:17200),从 EDTA 血液试管中采集的 200 µL 血浆中纯化总 RNA,并用 50 µL 的洗脱液进行洗脱。同样的 RNA 也使用 Micro-Elute RNA 柱浓缩了两倍,用 25 µL 的洗脱液进行洗脱。使用用于 Illumina® 的 NEBNext® Small RNA 文库制备套装,按照制造商的说明,将 5 μL 未额外浓缩的 RNA 和 2 倍浓缩的 RNA 作为输入,在 MiSeq(Illumina)平台上生成用于小 RNA NGS 的 RNA 文库。A) 在 6% TBE 聚丙烯酰胺凝胶上观察制备的小 RNA 文库,与未浓缩的 RNA 相比,用 2X 浓缩 RNA 制备的文库含有更多的连接/索引 miRNA cDNA(147-160 bp)产物。B) 从切除的凝胶条带中提取 cDNA,并使用 Agilent 2100 生物分析仪(高灵敏度 DNA 检测)进行检测。正如输入所预期的那样,用 2 倍浓缩的 RNA 样本制备的小 RNA 文库比未经事先浓缩的 RNA 文库浓缩约两倍(分别为 39.8 对 21.2 nM)。
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试剂盒规格(旋转柱)
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| 色谱柱最大结合能力 | 35 μg |
| 纯化的 RNA 大小 | 所有大小,包括小 RNA (<200 nt) |
| 起始材料的最大用量 | 35 μg RNA |
| 最小洗脱体积 | 20 μL |
| 完成 10 次净化所需的时间 | 20 分钟 |
| 平均回收率 | ≥ 90% |
储存条件和产品稳定性
所有溶液都应密封保存在室温下。该试剂盒自发货之日起 2 年内保持稳定。
Documentation
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