用于从培养的细胞和组织中纯化细胞质和核 RNA
细胞质/核 RNA 纯化
用于从培养的细胞和组织中纯化细胞质和核 RNA
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Supporting Data
Figure 1. Effective Separation of HeLa Cell Cytoplasmic & Nuclear RNA.
Norgen's Cytoplasmic & Nuclear RNA Purification Kit was used to effectively separate cytoplasmic and nuclear RNA from 0.75 million HeLa cells in triplicate. Panel A: High quality cytoplasmic and nuclear RNA was purified using Norgen's kit. Note the integrity and quality of both cytoplasmic and nuclear RNA. Ten microliters of each 50 µL elution were run on a 1.5% formaldehyde-agarose gel. Lane M is Norgen's 1 kb RNA Ladder, lanes 1-3 contain nuclear RNA and lanes 4-6 contain cytoplasmic RNA. Panel B: Ten microliters of the above cytoplasmic and nuclear RNA isolated from HeLa cells using Norgen's kit was run on a 0.9% agarose DNA gel. Genomic DNA is clearly visible in the nuclear RNA fractions (lanes 1-3), however, no genomic DNA can be detected in the cytoplasmic RNA fractions (lanes 4-6). Note that an optional on-column DNase treatment protocol is provided to remove the genomic DNA in the nuclear fraction.
Figure 2. Superior Separation of HeLa Cell Cytoplasmic & Nuclear RNA.
Norgen's Cytoplasmic & Nuclear RNA Purification Kit provides better separation of cytoplasmic and nuclear RNA from 0.8 million HeLa cells when compared to a leading competitor’s product. Panel A: Cytoplasmic and nuclear RNA purified from HeLa cells using Norgen's kit and a competitor's kit. Ten microliters of each 50 µL elution (Norgen or competitor's kit) of the cytoplasmic (C) or nuclear (N) RNA were run on a 1.5% formaldehyde-agarose gel. Higher yields of RNA with good integrity were isolated using Norgen's kit. Panel B: Ten microliters of the cytoplasmic and nuclear RNA isolated from HeLa cells using Norgen's kit and the competitor's kit was run on a 0.9% agarose gel. Genomic DNA only co-migrates with the nuclear fraction in RNA isolated using Norgen’s Cytoplasmic & Nuclear RNA Purification Kit, not the cytoplasmic fraction. Note that an optional on-column DNase treatment protocol is provided to remove the genomic DNA in the nuclear fraction. In contrast, significant genomic DNA contamination was observed in the cytoplasmic fraction of the RNA isolated using the competitor's kit.
Figure 3. Genomic DNA-free Cytoplasmic RNA.
RT-PCR was performed using human beta actin primers on 2 µL of the 50 µL of cytoplasmic RNA isolated from 1 million HeLa cells using Norgen's Cytoplasmic & Nuclear RNA Purification Kit. Lane M is Norgen's PCR Sizer DNA ladder, Lanes 1 and 3 are the negative control (PCR only, without reverse transcript), and Lanes 2 and 4 are the actual RT-PCR that show the expected 166 bp RT-PCR product. The expected amplicon size from the gene copy is the same as that from the RNA transcript. The lack of product in lanes 1 and 3 indicates that no genomic DNA contamination is present in the isolated cytoplasmic RNA. All PCR products were resolved on a 1X TAE, 2% agarose gel.
Figure 4. Specific Separation and Subsequent Amplification of Cytoplasmic and Nuclear Transcripts.
Norgen's Cytoplasmic & Nuclear RNA Purification Kit effectively separates cytoplasmic and nuclear RNA. RT-PCR was performed using human U2 snRNA (Panel A) or S14 (Panel B) primers on 0.5 µg of either cytoplasmic or nuclear RNA fractions isolated from 1 million HeLa cells using Norgen's Cytoplasmic & Nuclear RNA Purification Kit. In Panel A, an intense PCR product was observed only in the nuclear fraction when the nuclear-specific U2 snRNA primers were used. In Panel B, the majority of the PCR product for the house-keeping transcript of S14 was observed in the cytoplasmic fraction. The two results combined showed effective separation of the cytoplasmic and nuclear RNA using Norgen's Cytoplasmic & Nuclear RNA Purification Kit. All PCR products were resolved on a 1X TAE, 1.5% agarose DNA gel.
图 1.有效分离 HeLa 细胞的细胞质与核 RNA。Norgen 的细胞质和核 RNA 纯化试剂盒用于从 0.75 万个 HeLa 细胞中有效分离细胞质和核 RNA,每次分离三份。A 组:使用 Norgen 试剂盒纯化了优质细胞质和细胞核 RNA。注意细胞质和细胞核 RNA 的完整性和质量。在 1.5% 甲醛-琼脂糖凝胶上运行每 50 µL 洗脱液中的 10 µL。M 泳道为 Norgen 的 1 kb RNA 梯,1-3 道为核 RNA,4-6 泳道为细胞质 RNA。B 组:用 Norgen 试剂盒从 HeLa 细胞中分离出 10 μL 上述细胞质和细胞核 RNA,然后在 0.9% 琼脂糖 DNA 凝胶上检测。核 RNA 产物(1-3 泳道)中可以清楚地看到基因组 DNA,但在细胞质 RNA 产物(4-6 泳道)中检测不到基因组 DNA。请注意,我们提供了可选的柱上 DNase 处理方案,以去除核馏分中的基因组 DNA。
图 2.超强分离 HeLa 细胞的细胞质和核 RNA。与竞争对手的主要产品相比,Norgen 的细胞质和核 RNA 纯化试剂盒能更好地从 0.8 百万 HeLa 细胞中分离出细胞质和核 RNA。A 组:使用 Norgen 试剂盒和竞争对手的试剂盒从 HeLa 细胞中纯化的细胞质和细胞核 RNA。在 1.5% 甲醛-琼脂糖凝胶上分别取 10 µL 细胞质(C)或细胞核(N)RNA 的 50 µL 洗脱液(Norgen 或竞争对手试剂盒)。使用 Norgen 试剂盒分离出的 RNA 产率更高,完整性更好。B 组:用 Norgen 试剂盒和竞争对手试剂盒从 HeLa 细胞中分离出 10 μL 的细胞质和细胞核 RNA,在 0.9% 琼脂糖凝胶上检测。基因组 DNA 只与使用诺健细胞质与核 RNA 纯化试剂盒分离的 RNA 中的核部分发生共迁移,而不与细胞质部分发生共迁移。请注意,我们提供了可选的柱上 DNase 处理方案,以去除核馏分中的基因组 DNA。与此相反,使用竞争对手试剂盒分离的 RNA 的细胞质部分出现了严重的基因组 DNA 污染。
图 3.不含基因组 DNA 的细胞质 RNA。使用 Norgen 的细胞质与核 RNA 纯化试剂盒从 100 万个 HeLa 细胞中分离出 50 µL 的细胞质 RNA,使用人β 肌动蛋白引物对其中的 2 µL 进行 RT-PCR 扩增。M 泳道是 Norgen 的聚合酶链式反应Sizer DNA 梯子,泳道 1 和 3 是阴性对照(仅 PCR,无反向转录),2 和 4 泳道是实际 RT-PCR,显示预期的 166 bp RT-PCR 产物。基因拷贝的预期扩增片段大小与 RNA 转录本相同。1 和 3 泳道中没有产物,说明分离的细胞质 RNA 中没有基因组 DNA 污染。所有聚合酶链式反应产物均在 1X TAE、2% 琼脂糖凝胶上分离。
图 4.细胞质和核转录本的特异性分离和后续扩增。Norgen 的细胞质和核 RNA 纯化试剂盒能有效分离细胞质和核 RNA。使用 Norgen 的细胞质与核 RNA 纯化试剂盒从 100 万个 HeLa 细胞中分离出 0.5 µg 的细胞质或核 RNA 产物,使用人 U2 snRNA(A 组)或 S14(B 组)引物进行 RT-PCR。在面板 A 中,当使用核特异性 U2 snRNA 引物时,仅在核部分观察到强烈的聚合酶链式反应产物。在 B 组中,在细胞质部分观察到了 S14 的看家转录本的大部分聚合酶链式反应产物。这两项结果表明,使用 Norgen 的细胞质和核 RNA 纯化试剂盒可以有效分离细胞质和核 RNA。所有聚合酶链式反应产物均在 1X TAE、1.5% 琼脂糖 DNA 凝胶上分离。
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试剂盒规格
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最大色谱柱结合能力
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高达 50 µg RNA
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最大色谱柱装载量
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650 µL
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纯化的 RNA 大小
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所有大小,包括小 RNA(< 200 nt)
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| 完成 10 次净化所需时间 |
45 分钟
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RNA 产量
HeLa (1 x 106) - 细胞质 RNA HeLa (1 x 106) - 核 RNA |
15 µg ≤ 3.5 µg |
储存条件和产品稳定性
所有溶液都应密封保存在室温下。该试剂盒自发货之日起 2 年内保持稳定。
Documentation
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