Pathogen Class Nature of Disease
TaqMan Probe
SYBR Green
End-Point
Bacillus cereus Bacteria Gastrointestinal, food-borne
 
Chlamydia Bacteria STD
 
Chlamydia/Neisseria gonorrhoeae Bacteria STD
Clostridium difficile Bacteria Gastrointestinal
 
Escherichia coli (E. coli) O157:H7 Bacteria Gastrointestinal, food-borne
Mycobacterium tuberculosis Bacteria Respiratory
 
Neisseria gonorrhoea Bacteria STD
 
Staphyloccocus aureus Bacteria Respiratory
 
Vibrio cholerae Bacteria Gastrointestinal
 
Candida albicans Fungus Oral/Genital
 
Pneumocystis jirovecii Fungus Parasitic infection
 
Malaria Protozoa Parasitic infection, insect-borne
 
Trichomonas vaginalis Protozoa STD
 
Adenovirus Type C Virus Respiratory
 
Avian Influenza A Virus (H5N1) Virus Respiratory
 
BK virus (BKV) Virus Respiratory
 
BK virus/John Cunningham virus (BKV/JCV) Virus Respiratory/Brain
Cytomegalovirus (CMV) Virus  
 
Enterovirus (HEV) Virus Gastrointestinal/Respiratory
 
Epstein–Barr virus (EBV) Virus B cells and epithilial cells
 
Hepatitis B virus (HBV) Virus Bloodborne/STD
 
Hepatitis C virus (HCV) Virus Bloodborne/STD
 
Herpes simplex virus (HSV) 1 Virus Orofacial/Genital
 
Herpes simplex virus (HSV) 2 Virus Genital
 
Herpes simplex virus (HSV) 1 & 2 Virus Orofacial/Genital
Human immunodeficiency virus (HIV) Virus Bloodborne/STD
 
Human papillomavirus (HPV) High Risk Virus STD
Human papillomavirus (HPV) High and Low Risk Virus STD
 
Human papillomavirus (HPV) 6/16 Virus STD
Influenza A Virus (H1N1) Virus Respiratory
 
John Cunningham virus (JCV) Virus Brain (causes progressive multifocal leukoencephalopathy)
 
Norovirus (NoV) Virus Gastrointestinal
 
Parvovirus B19 Virus Respiratory
 
Respiratory syncytial virus (RSV) A Virus Respiratory
 
Sin Nombre Virus (SNV) Virus Respiratory
 
Varicella zoster virus (VZV) Virus  
 
West Nile Virus (WNV) Virus Insect-borne
 
Xenotropic murine leukemia virus-related virus (XMRV) Virus  
 
Zika Virus (ZIKV) Virus Respiratory
Cryptococcus neoformans Yeast Respiratory