Pathogen Class Nature of Disease
TaqMan Probe
End-Point
Bacillus cereus Bacteria Gastrointestinal, food-borne
Chlamydia Bacteria STD
Chlamydia/Neisseria gonorrhoeae Bacteria STD
Clostridium difficile Bacteria Gastrointestinal
Escherichia coli (E. coli) O157:H7 Bacteria Gastrointestinal, food-borne
Mycobacterium tuberculosis Bacteria Respiratory
Neisseria gonorrhoea Bacteria STD
Staphyloccocus aureus Bacteria Respiratory
Vibrio cholerae Bacteria Gastrointestinal
Candida albicans Fungus Oral/Genital
Pneumocystis jirovecii Fungus Parasitic infection
Malaria Protozoa Parasitic infection, insect-borne
Trichomonas vaginalis Protozoa STD
Adenovirus Type C Virus Respiratory
Avian Influenza A Virus (H5N1) Virus Respiratory
BK virus (BKV) Virus Respiratory
BK virus/John Cunningham virus (BKV/JCV) Virus Respiratory/Brain
Cytomegalovirus (CMV) Virus  
Enterovirus (HEV) Virus Gastrointestinal/Respiratory
Epstein–Barr virus (EBV) Virus B cells and epithilial cells
Hepatitis B virus (HBV) Virus Bloodborne/STD
Hepatitis C virus (HCV) Virus Bloodborne/STD
Herpes simplex virus (HSV) 1 Virus Orofacial/Genital
Herpes simplex virus (HSV) 2 Virus Genital
Herpes simplex virus (HSV) 1 & 2 Virus Orofacial/Genital
Human immunodeficiency virus (HIV) Virus Bloodborne/STD
Human papillomavirus (HPV) High Risk Virus STD
Human papillomavirus (HPV) High and Low Risk Virus STD
Human papillomavirus (HPV) 6/16 Virus STD
Influenza A Virus (H1N1) Virus Respiratory
John Cunningham virus (JCV) Virus Brain (causes progressive multifocal leukoencephalopathy)
Norovirus (NoV) Virus Gastrointestinal
Parvovirus B19 Virus Respiratory
Respiratory syncytial virus (RSV) A Virus Respiratory
Sin Nombre Virus (SNV) Virus Respiratory
Varicella zoster virus (VZV) Virus  
West Nile Virus (WNV) Virus Insect-borne
Xenotropic murine leukemia virus-related virus (XMRV) Virus  
Zika Virus (ZIKV) Virus Respiratory
Cryptococcus neoformans Yeast Respiratory